Package: castgen
Title: Estimate Sample Size for Population Genomic Studies
Version: 1.0.2
Authors@R: 
    person("Alexander M.", "Sandercock", , "ams866@cornell.edu", role = c("aut", "cre"),
           comment = c(ORCID = "https://orcid.org/0000-0001-6897-1856"))
Description: Estimate sample sizes needed to capture target levels of
        genetic diversity from a population (multivariate allele
        frequencies) for applications like germplasm conservation and
        breeding efforts. Compares bootstrap samples to a full
        population using linear regression, employing the R-squared
        value to represent the proportion of diversity captured.
        Iteratively increases sample size until a user-defined target
        R-squared is met. Offers a parallelized R implementation of a
        previously developed 'python' method. All ploidy levels are
        supported. For more details, see Sandercock et al. (2024)
        <doi:10.1073/pnas.2403505121>.
License: Apache License (>= 2)
URL: https://github.com/alex-sandercock/castgen
BugReports: https://github.com/alex-sandercock/castgen/issues
Imports: doParallel (>= 1.0.17), dplyr (>= 1.1.2), foreach (>= 1.5.2),
        parallel (>= 4.0.0), Rdpack (>= 0.7), stats, utils, vcfR (>=
        1.15.0)
Suggests: testthat (>= 3.0.0)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Config/pak/sysreqs: libicu-dev
Repository: https://alex-sandercock.r-universe.dev
Date/Publication: 2025-04-02 20:01:46 UTC
RemoteUrl: https://github.com/alex-sandercock/castgen
RemoteRef: HEAD
RemoteSha: 2a218145cea3ebebad9d8a54fdcbb688bf883e46
NeedsCompilation: no
Packaged: 2026-10-15 09:16:11 UTC; root
Author: Alexander M. Sandercock [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-6897-1856>)
Maintainer: Alexander M. Sandercock <ams866@cornell.edu>